草菇GH61家族基因的生物信息学分析及金属离子对其表达水平的影响Bioinformatic and gene expression analyses of the GH61 family genes of Volvariella volvacea
饶佳;鲍大鹏;李燕;汪滢;程向阳;王莹;
摘要(Abstract):
在前期工作中发现草菇含有30个GH61家族基因同源物(Vv_gh61_1至Vv_gh61_30),进一步分析了这些基因的结构特点以及其编码蛋白基本性质和系统进化关系,并研究了Cu(2+)和Mn(2+)和Mn(2+)对基因表达水平的影响。分析表明有17个草菇GH61基因串联成6个基因簇,存在明显的串联重复现象,系统发育树与基因外显子位置分析表明串联重复基因分布在同一进化分枝上并具有相似的基因结构,串联重复基因编码序列一致性在71%–94%之间。草菇GH61编码蛋白的氨基酸数目在217–442aa之间,分子量和等电点分别介于22.4–45.4k Da和5.2–9.3之间,绝大多数都含有信号肽并定位在细胞外,都含有Glyco_hydro_61功能域以及CBM1、peroxidase等多样化的功能域,系统进化树表明草菇GH61家族基因具有3个主要进化分枝,与灰盖鬼伞等的GH61基因有较近的进化关系。金属离子诱导作用显示,Mn2+对草菇GH61家族基因的表达水平存在诱导作用而Cu2+的诱导作用不明显。
关键词(KeyWords): 草菇;GH61家族;串联重复;基因表达
基金项目(Foundation): 上海市科技人才计划项目(13XD1424700)~~
作者(Authors): 饶佳;鲍大鹏;李燕;汪滢;程向阳;王莹;
DOI: 10.13346/j.mycosystema.150014
参考文献(References):
- Agger WJ,Isaksen T,Várnai A,Vidal-Melgosa S,Willats WG,Ludwig R,Horn SJ,Eijsink VG,Westereng B,2014.Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation.Proceedings of the National Academy of Sciences,111(17):6287-6292
- Bao DP,Gong M,Zheng HJ,Chen MJ,Zhang L,Wang H,Jiang JP,Wu L,Zhu YQ,Zhu G,Zhou Y,Li CH,Wang SY,Zhao Y,Zhao GP,Tan Q,2013.Sequencing and comparative analysis of the straw mushroom(Volvariella volvacea)genome.PLo S One,8(3):1-12
- Boraston AB,Bolam DN,Gilbert HJ,Davies GJ,2004.Carbohydrate-binding modules:fine-tuning polysaccharide recognition.Biochemical Journal,382(3):15
- Chen S,Ge W,Buswell JA,2004.Molecular cloning of a new laccase from the edible straw mushroom Volvariella volvacea:possible involvement in fruitbody development.FEMS Microbiology Letters,230(2):171-176
- Chen SC,Ma DB,Ge W,Buswell JA,2003.Induction of laccase activity in the edible straw mushroom,Volvariella volvacea.FEMS Microbiology Letters,218:143-148
- Feng F,Wang SW,Wang J,Liu G,2014.High-level expression and characterization of GH61 glycoside hydrolase from Trichoderma reesei.Microbiology China,41(7):1261-1269(in Chinese)
- Harris PV,Welner D,Mc Farland KC,Edward R,Poulsen JCN,Brown K,Salbo R,Ding H,Vlasenko E,Merino S,Xu F,Cherry J,Larsen S,Leila LL,2010.Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61:structure and function of a large.Enigmatic Family Biochemistry,49(15):3305-3316
- Isaksen T,Westereng B,Aachmann FL,Agger JW,Kracher D,Kittl R,Ludwig R,Haltrich D,Eijsink VG,Horn SJ,2014.AC4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides.The Journal of Biological Chemistry,289(5):2632-2642
- Kraulis PJ,Clore GM,Nilges M,Jones TA,Pettersson G,Knowles J,Gronenborn AM,1989.Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei.A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing.Biochemistry,28(18):7241-7257
- Langston JA,Shaghasi T,Abbate E,Xu F,Vlasenko E,Sweeney MD,2011.Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61.Applied and Environmental Microbiology,77(19):7007-7015
- Leggio LL,Welner D,Maria LD,2012.A structural overview of GH61 proteins-fungal cellulose degrading polysaccharide monooxygenases.Computational and Structural Biotechnology Journal,2(3):1-8
- Li HJ,Tan J,2006.Progress on gene duplication research.Life Sciences,18(2):150-154(in Chinese)
- Li J,Ni XJ,Fan SJ,Cai DH,2006.Activity changes of several extracellular enzymes in different growth periods of Pleurotus citrinopileatus.Journal of Jilin Agricultural University,28(6):619-622(in Chinese)
- Li X,Beeson WT,Phillips CM,Marletta MA,Cate JHD,2012.Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases.Structure,20(6):1051-1061
- Phillips CM,Beeson WT,Cate JH,Marletta MA,2011.Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa.ACS Chemical Biology,6(12):1399-1406
- Raguz S,Yagüe E,Wood DA,Thurston CF,1992.Isolation and characterization of a cellulose-growth-specific gene from Agaricus bisporus.Gene,119(2):183-273
- Quinlan RJ,Sweeney MD,Leggio LL,Otten H,Poulsen JC,Johansen KS,Krogh KB,J?rgensen CI,Tovborg M,Anthonsen A,Tryfona T,Walter CP,Dupree P,Xu F,Davies GJ,Walton PH,2011.Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.Proceedings of the National Academy of Sciences,108(37):15079-15084
- Saloheimo M,Nakari Setala T,Tenkanen M,Penttila M,1997.c DNA cloning of a Trichoderma reesei cellulase and demonstration of endoglucanase activity by expression in yeast.European Journal of Biochemistry,249(2):584-591
- Tian C,Beeson WT,Iavarone AT,Sun J,Marletta MA,Cate JH,Glass NL,2009.Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa.Proceedings of the National Academy of Sciences,106:22157-22162
- Vaaje-Kolstad G,Westereng B,Horn SJ,Liu Z,Zhai H,S?rlie M,Eijsink VG,2010.An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides.Science,330(6001):219-222
- 冯飞,王绍文,王娟,刘刚,2014.里氏木霉GH61家族糖苷酶的高效表达及酶学特性研究.微生物学通报,41(7):1261-1269
- 李鸿健,谭军,2006.基因倍增研究进展.生命科学,18(2):150-154
- 李娟,倪新江,樊守金,蔡德华,2006.金顶侧耳不同生长期几种胞外酶活性变化.吉林农业大学学报,28(6):619-622